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The Top 23 Bioinformatics Comparative Genomics Open Source Projects

Open source projects categorized as Bioinformatics Comparative Genomics
Categories > Data Processing > Bioinformatics
Categories > Comparative Genomics
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97most recent commit 4 months agopypi jcvi} Downloads
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13most recent commit 4 months agopypi pycirclize} Downloads
Anvio ⭐ 396
An analysis and visualization platform for 'omics data
most recent commit 3 months ago
Ppanggolin ⭐ 191
Build a partitioned pangenome graph from microbial genomes
total releases 6most recent commit 3 months ago
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23most recent commit 6 months agopypi pygenomeviz} Downloads
Sibeliaz ⭐ 113
A fast whole-genome aligner based on de Bruijn graphs
most recent commit 2 years ago
Ensembl Compara ⭐ 46
The Ensembl Compara Perl API and SQL schema
most recent commit 3 months ago
Genera ⭐ 41
genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
most recent commit 4 months ago
Twopaco ⭐ 39
A fast constructor of the compressed de Bruijn graph from many genomes
most recent commit 2 years ago
Aniclustermap ⭐ 38
A tool for drawing ANI clustermap between all-vs-all microbial genomes
total releases 5most recent commit 5 months ago
Gcv ⭐ 32
Federating genomes with love (and synteny derived from functional annotations)
most recent commit 5 months ago
Orthogene ⭐ 31
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️
most recent commit 4 months ago
Pcg ⭐ 28
𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search
most recent commit 2 years ago
Zol ⭐ 28
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
total releases 2most recent commit 3 months ago
Cogclassifier ⭐ 27
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
dependent packages 1total releases 7most recent commit 5 months agopypi cogclassifier} Downloads
Kinfin ⭐ 24
Taxon-aware analysis of clustered protein sequences
most recent commit 2 years ago
Compare_genomes ⭐ 23
A comparative genomics workflow using Nextflow, conda, Julia and R
most recent commit 5 months ago
Gssplayground ⭐ 21
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
most recent commit 4 years ago
Biokit ⭐ 20
a versatile toolkit for processing and analyzing diverse types of sequence data
total releases 13most recent commit 4 months ago
Mgcplotter ⭐ 20
Microbial Genome Circular plotting tool for comparative genomics using Circos
total releases 3most recent commit a year ago
Cgview_comparison_tool ⭐ 19
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
most recent commit 2 years ago
Amoebae ⭐ 14
Workflow for identifying and classifying homologous gene/protein sequences
most recent commit a year ago
Compbio Gists ⭐ 12
Computational Biology & Bioinformatics Resources
most recent commit a year ago
The 4 Most Depended On Bioinformatics Comparative Genomics Open Source Projects
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13latest release July 20, 2023most recent commit 4 months agopypi pycirclize} Downloads
Cogclassifier ⭐ 27
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
dependent packages 1total releases 7latest release September 07, 2022most recent commit 5 months agopypi cogclassifier} Downloads
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23latest release October 28, 2023most recent commit 6 months agopypi pygenomeviz} Downloads
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97latest release August 30, 2023most recent commit 4 months agopypi jcvi} Downloads
The 10 Latest Releases In Bioinformatics Comparative Genomics Open Source Projects
Biokit ⭐ 20
a versatile toolkit for processing and analyzing diverse types of sequence data
total releases 13latest release November 11, 2023most recent commit 4 months ago
Aniclustermap ⭐ 38
A tool for drawing ANI clustermap between all-vs-all microbial genomes
total releases 5latest release November 07, 2023most recent commit 5 months ago
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23latest release October 28, 2023most recent commit 6 months agopypi pygenomeviz} Downloads
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97latest release August 30, 2023most recent commit 4 months agopypi jcvi} Downloads
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13latest release July 20, 2023most recent commit 4 months agopypi pycirclize} Downloads
Cogclassifier ⭐ 27
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
dependent packages 1total releases 7latest release September 07, 2022most recent commit 5 months agopypi cogclassifier} Downloads
Mgcplotter ⭐ 20
Microbial Genome Circular plotting tool for comparative genomics using Circos
total releases 3latest release April 19, 2022most recent commit a year ago
Gbkviz ⭐ 7
Easy-to-use web application for visualization and comparison of genomes in Genbank file
total releases 12latest release March 31, 2022most recent commit 2 years ago
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