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The Top 23 Bioinformatics Chip Seq Open Source Projects

Open source projects categorized as Bioinformatics Chip Seq
Categories > Data Processing > Bioinformatics
Categories > Chip Seq
Deeptools ⭐ 644
Tools to process and analyze deep sequencing data.
most recent commit 12 days ago
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
Reg Gen ⭐ 96
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
most recent commit 6 months ago
Dolphinnext ⭐ 92
A graphical user interface for distributed data processing of high throughput genomics
most recent commit a year ago
Epic ⭐ 32
(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
total releases 52most recent commit 5 years ago
Gonetics ⭐ 30
Go / Golang Bioinformatics Library
dependent packages 2total releases 2most recent commit 3 years ago
Bioinf Commons ⭐ 30
Bioinformatics library in Kotlin
most recent commit 3 months ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29most recent commit a year ago
Biotoolbox ⭐ 27
Tools for querying and analysis of genomic data
most recent commit 7 months ago
Pm4ngs ⭐ 21
Project Manager for NGS data analysis
most recent commit 2 years ago
Open_pipelines ⭐ 17
Pipelines for NGS data preprocessing by the Bock lab and friends
most recent commit 2 years ago
Marge ⭐ 16
API for HOMER in R for Genomic Analysis using Tidy Conventions
most recent commit 4 years ago
Manorm ⭐ 14
A robust model for quantitative comparison of ChIP-Seq data sets.
most recent commit 4 years ago
Pybedgraph ⭐ 13
A Python package for fast operations on 1-dimensional genomic signal tracks
total releases 25most recent commit 4 years ago
Cnnpeaks ⭐ 13
The ChIP-Seq peak calling algorithm using convolution neural networks
most recent commit 3 years ago
Toolkit ⭐ 13
A toolkit for NGS analysis with Python
total releases 32most recent commit a year ago
Workflows ⭐ 12
CWL based Bioinformatics Workflows
total releases 11most recent commit 3 months ago
Ebaii ⭐ 12
Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"
most recent commit 5 months ago
Enrichment_analysis ⭐ 10
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
most recent commit 9 months ago
Moca ⭐ 9
Ⓜ️ Tool for motif conservation analysis
most recent commit 2 years ago
Genextender ⭐ 8
R/Bioconductor package for optimized functional annotation of ChIP-seq data
most recent commit 5 years ago
Span ⭐ 7
SPAN Semi-supervised Peak Analyzer
most recent commit 3 months ago
Reli ⭐ 7
Regulatory Element Locus Intersection (RELI) Analysis
most recent commit 3 years ago
The 6 Latest Releases In Bioinformatics Chip Seq Open Source Projects
Gonetics ⭐ 30
Go / Golang Bioinformatics Library
dependent packages 2total releases 2latest release August 16, 2021most recent commit 3 years ago
Pybedgraph ⭐ 13
A Python package for fast operations on 1-dimensional genomic signal tracks
total releases 25latest release April 03, 2020most recent commit 4 years ago
Toolkit ⭐ 13
A toolkit for NGS analysis with Python
total releases 32latest release September 23, 2019most recent commit a year ago
Workflows ⭐ 12
CWL based Bioinformatics Workflows
total releases 11latest release December 13, 2018most recent commit 3 months ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29latest release September 21, 2018most recent commit a year ago
Epic ⭐ 32
(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
total releases 52latest release August 02, 2018most recent commit 5 years ago
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