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The Top 23 C Bioinformatics Open Source Projects

Open source projects categorized as C Bioinformatics
Scanpav ⭐ 7
Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
most recent commit 6 years ago
Rbcf ⭐ 7
R Bindings for htslib/bcf
most recent commit 3 years ago
Sonlib ⭐ 7
Small general-purpose library for C and Python with an emphasis on bioinformatics.
most recent commit a year ago
Scaffhic ⭐ 7
Pipeline for genome scaffolding by modelling distributions of HiC pairs
most recent commit a year ago
Lvb ⭐ 6
LVB phylogeny reconstruction software.
most recent commit a year ago
Kermit ⭐ 6
guided genome assembler using colored overlap graphs
most recent commit 3 years ago
Gotoh ⭐ 6
Short implementation (~500 lines) of the Gotoh algorithm, a.k.a. Needleman-Wunsch with affine gap penalties.
most recent commit 4 years ago
Tersect ⭐ 6
Command-line utility for conducting fast set theoretical operations and genetic distance estimation on biological sequence variant data.
most recent commit 4 years ago
Nanoplexer ⭐ 6
Tool for demultiplexing Nanopore barcode sequence data
most recent commit 4 years ago
Ensembl Xs ⭐ 6
A collection of XS modules to be used with the Ensembl APIs
most recent commit 3 months ago
Vcfppr ⭐ 6
Rapid processing of VCF/BCF files in R!
most recent commit 3 months ago
Tatajuba ⭐ 5
Identification and classification of homopolymeric tracts from reads.
most recent commit 8 months ago
Bc_tsne ⭐ 5
Batch-corrected t-SNE
total releases 2most recent commit 2 years ago
Freeform Virus Blinky ⭐ 5
Freeform electronics sculpture of a SARS-CoV-2 virus that blinks it's own RNA sequence.
most recent commit 3 years ago
Seqcode ⭐ 5
Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data
most recent commit 2 years ago
Lofreq Fpga ⭐ 5
FPGA Acceleration for the LoFreq variant caller
most recent commit 5 months ago
Rhdf5filters ⭐ 5
Distributing additional HDF5 compression filters as an R package. Intended to be used with rhdf5, however the compiled filters can also be used with external applications.
most recent commit 4 months ago
Bio Alignment ⭐ 5
Implementation of Needleman-Wunsch, Smith-Waterman, Hirschberg and affine bioinformatics algorithms for alighning biological sequences
most recent commit 4 years ago
Hbind ⭐ 5
Calculates hydrogen-bond interaction tables for protein-small molecule complexes, based on protein PDB and protonated ligand MOL2 structure input. Raschka et al. (2018) J. Computer-Aided Molec. Design
most recent commit 4 years ago
Mica Aligner ⭐ 5
MICA-aligner is a new short-read aligner that is optimized in view of MIC's limitation and the extra parallelism inside each MIC core.
most recent commit 9 years ago
Pandoras Modules ⭐ 5
A set of modules to build bioinformatics programs.
most recent commit 9 years ago
Benchmark ⭐ 5
Bioinformatics scripts
most recent commit 9 years ago
Stringmeup ⭐ 5
A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.
most recent commit 3 years ago
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