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The Top 17 Rna Seq Bioconductor Open Source Projects

Open source projects categorized as Rna Seq Bioconductor
Categories > Bioconductor
Categories > Rna Seq
Bioc Refcard ⭐ 170
Bioconductor cheat sheet
most recent commit 2 years ago
Bambu ⭐ 150
Reference-guided transcript discovery and quantification for long read RNA-Seq data
most recent commit 4 months ago
Tximport ⭐ 128
Transcript quantification import for modular pipelines
most recent commit 7 months ago
Derfinder ⭐ 42
Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
most recent commit a year ago
Recount ⭐ 40
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
most recent commit a year ago
Ideal ⭐ 28
Interactive Differential Expression AnaLysis - DE made accessible and reproducible
most recent commit 6 months ago
Recount3 ⭐ 24
Explore and download data from the recount3 project
most recent commit a year ago
Fishpond ⭐ 23
Differential expression and allelic analysis, nonparametric statistics
most recent commit 8 months ago
Alpine ⭐ 22
Modeling and correcting fragment sequence bias for RNA-seq
most recent commit 6 years ago
Degreport ⭐ 21
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
most recent commit 3 months ago
Cd4 Csaw ⭐ 15
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
most recent commit 5 years ago
Recount Website ⭐ 12
Code for the Recount project
most recent commit 8 months ago
Regionreport ⭐ 9
Generate HTML report for a set of genomic regions or DESeq2/edgeR results
most recent commit a year ago
Hcadata ⭐ 7
Access data from the Human Cell Atlas project, directly via R/Bioconductor
most recent commit 6 months ago
Fluentgenomics ⭐ 7
plyranges and tximeta case study
most recent commit 10 months ago
Recount Contributions ⭐ 5
Contribute your human Illumina RNA-seq data to recount2
most recent commit 6 years ago
Methods ⭐ 5
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
most recent commit a year ago
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