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The Top 23 Bioinformatics Bioconductor Open Source Projects

Open source projects categorized as Bioinformatics Bioconductor
Categories > Bioconductor
Categories > Data Processing > Bioinformatics
Dada2 ⭐ 428
Accurate sample inference from amplicon data with single nucleotide resolution
most recent commit 3 months ago
Karyoploter ⭐ 278
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
most recent commit 3 months ago
Splatter ⭐ 195
Simple simulation of single-cell RNA sequencing data
most recent commit 5 months ago
Bioc Refcard ⭐ 170
Bioconductor cheat sheet
most recent commit 2 years ago
Msnbase ⭐ 115
Base Classes and Functions for Mass Spectrometry and Proteomics
most recent commit 4 months ago
Rblast ⭐ 91
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
most recent commit 6 months ago
Genomicdatacommons ⭐ 80
Provide R access to the NCI Genomic Data Commons portal.
most recent commit 3 months ago
Geoquery ⭐ 73
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
most recent commit 9 months ago
Cmapr ⭐ 56
Tools for manipulating annotated data matrices
most recent commit 3 years ago
Wdlrunr ⭐ 34
Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
most recent commit 2 years ago
Orthogene ⭐ 31
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️
most recent commit 4 months ago
Rcpi ⭐ 28
Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.
most recent commit 9 months ago
Tidysq ⭐ 28
tidy processing of biological sequences in R
total releases 3most recent commit 2 years ago
Biomart ⭐ 27
R package providing query functionality to BioMart instances like Ensembl
most recent commit 3 months ago
Sevenbridges R ⭐ 27
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
most recent commit 3 years ago
Circtools ⭐ 22
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
most recent commit 4 months ago
Risa ⭐ 17
Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomics-based assays (i.e. mass spectrometry) can be processed into an xcmsSet object (from the xcms R package).
most recent commit 6 years ago
Normalyzerde ⭐ 14
Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
most recent commit 7 months ago
Artms ⭐ 13
Analytical R Tools for Mass Spectrometry
most recent commit 10 months ago
Signer ⭐ 12
most recent commit 6 months ago
Cogena ⭐ 12
co-expressed gene-set enrichment analysis
most recent commit 5 months ago
Proloc ⭐ 11
A unifying bioinformatics framework for organelle proteomics
most recent commit a year ago
Piano ⭐ 11
piano - An R/Bioconductor package for gene set analysis
most recent commit 2 years ago
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