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The Top 23 Bioconductor Open Source Projects

Open source projects categorized as Bioconductor
Categories > Bioconductor
Dada2 ⭐ 428
Accurate sample inference from amplicon data with single nucleotide resolution
most recent commit 3 months ago
Karyoploter ⭐ 278
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
most recent commit 3 months ago
Tcgabiolinks ⭐ 255
TCGAbiolinks
most recent commit 5 months ago
Rdocumentation 2.0 ⭐ 249
📚 RDocumentation provides an easy way to search the documentation for every version of every R package on CRAN and Bioconductor.
most recent commit 5 months ago
Splatter ⭐ 195
Simple simulation of single-cell RNA sequencing data
most recent commit 6 months ago
Bioc Refcard ⭐ 170
Bioconductor cheat sheet
most recent commit 2 years ago
Xcms ⭐ 160
This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
most recent commit 3 months ago
Tidybulk ⭐ 153
Brings bulk and pseudobulk transcriptomics to the tidyverse
most recent commit 5 months ago
Bambu ⭐ 150
Reference-guided transcript discovery and quantification for long read RNA-Seq data
most recent commit 4 months ago
Singler ⭐ 147
Clone of the Bioconductor repository for the SingleR package.
most recent commit 4 months ago
Tximport ⭐ 128
Transcript quantification import for modular pipelines
most recent commit 7 months ago
Mixomics ⭐ 126
Development repository for the Bioconductor package 'mixOmics '
most recent commit 6 months ago
Contributions ⭐ 123
Contribute Packages to Bioconductor
most recent commit 7 months ago
Msnbase ⭐ 115
Base Classes and Functions for Mass Spectrometry and Proteomics
most recent commit 4 months ago
Biocstickers ⭐ 115
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
most recent commit 8 months ago
Zellkonverter ⭐ 112
Conversion between scRNA-seq objects
most recent commit 3 months ago
Curatedmetagenomicdata ⭐ 109
Curated Metagenomic Data of the Human Microbiome
most recent commit 6 months ago
Anndata2ri ⭐ 104
Convert between AnnData and SingleCellExperiment
dependent packages 4total releases 11most recent commit 3 months agopypi anndata2ri} Downloads
Rblast ⭐ 91
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
most recent commit 6 months ago
Maaslin2 ⭐ 86
MaAsLin2: Microbiome Multivariate Association with Linear Models
most recent commit 7 months ago
Genomicdatacommons ⭐ 80
Provide R access to the NCI Genomic Data Commons portal.
most recent commit 3 months ago
Genetonic ⭐ 74
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
most recent commit 3 months ago
Geoquery ⭐ 73
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
most recent commit 10 months ago
The 4 Latest Releases In Bioconductor Open Source Projects
Anndata2ri ⭐ 104
Convert between AnnData and SingleCellExperiment
dependent packages 4total releases 11latest release August 24, 2023most recent commit 3 months agopypi anndata2ri} Downloads
Baseset ⭐ 8
Provides classes for working with sets
total releases 5latest release August 22, 2023most recent commit 3 months ago
Tidysq ⭐ 28
tidy processing of biological sequences in R
total releases 3latest release January 31, 2022most recent commit 2 years ago
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