Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Barcode Fastq Open Source Projects

Open source projects categorized as Barcode Fastq
Categories > Media > Barcode
Categories > Fastq
Zumis ⭐ 232
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
most recent commit a year ago
Qcat ⭐ 64
qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
total releases 3most recent commit 3 years ago
Calib ⭐ 34
Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
most recent commit a year ago
Sabre ⭐ 34
most recent commit 6 years ago
Paired Tag ⭐ 33
Analysis of Paired-Tag datasets
most recent commit 3 months ago
Flames ⭐ 33
Full-length transcriptome splicing and mutation analysis
most recent commit a year ago
Athena_meta ⭐ 31
read cloud assembler
most recent commit 5 years ago
Fastq_utils ⭐ 29
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
most recent commit a year ago
Mpraflow ⭐ 27
A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
most recent commit 3 months ago
Demultiplex ⭐ 26
Versatile FASTA/FASTQ demultiplexer.
total releases 9most recent commit 7 months ago
Split Seq_demultiplexing ⭐ 25
An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
most recent commit 7 months ago
Brb Seqtools ⭐ 24
Suite of tools for processing BRB-seq data
most recent commit 8 months ago
Lariat ⭐ 21
Linked-Read Alignment Tool
most recent commit 5 years ago
Sctools ⭐ 20
Utilities for large scale distributed single cell data processing
most recent commit a year ago
Pheniqs ⭐ 16
Fast and accurate sequence demultiplexing
most recent commit 2 years ago
Proc10xg ⭐ 16
processing 10x genomics reads
most recent commit 4 years ago
Icshape ⭐ 14
icSHAPE pipeline
most recent commit 9 years ago
Hamstring ⭐ 14
Tools for generating and decoding error-correcting DNA barcodes
most recent commit 2 years ago
Rageseq ⭐ 13
RAGE-seq scripts
most recent commit 3 years ago
Consensuscruncher ⭐ 12
ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a consensus sequence.
total releases 2most recent commit 3 years ago
Mcsmrt ⭐ 11
Microbiome Classifier Pipeline for Pacific Biosciences 16s Data
most recent commit a year ago
Larry ⭐ 10
most recent commit 10 months ago
Debarcer ⭐ 10
Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
total releases 8most recent commit 3 years ago
The 4 Latest Releases In Barcode Fastq Open Source Projects
Demultiplex ⭐ 26
Versatile FASTA/FASTQ demultiplexer.
total releases 9latest release November 13, 2021most recent commit 7 months ago
Qcat ⭐ 64
qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
total releases 3latest release July 16, 2019most recent commit 3 years ago
Popular Media Categories
Screenshot
Ffmpeg
Volume
Image Processing
Spotify
Radio
Playlist
Decoder
Qrcode
Encoder
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.