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The Top 16 Sam Bam Open Source Projects

Open source projects categorized as Sam Bam
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11most recent commit a month agocargo hts-sys} Downloads
Sambamba ⭐ 552
Tools for working with SAM/BAM data
total releases 1most recent commit 8 months ago
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit 4 months ago
Gtz ⭐ 156
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
most recent commit 2 years ago
Genozip ⭐ 144
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
total releases 132most recent commit 3 months ago
Learning_bam_file ⭐ 103
Learning the Sequence Alignment/Map format
most recent commit 8 months ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37most recent commit 3 months ago
Simplesam ⭐ 55
Simple pure Python SAM parser and objects for working with SAM records
most recent commit 2 years ago
Biod ⭐ 43
A D library for computational biology and bioinformatics
total releases 5most recent commit 4 years ago
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44most recent commit 7 months agopypi fuc} Downloads
Xam.jl ⭐ 24
Parse and process SAM and BAM formatted files
most recent commit 3 months ago
Samql ⭐ 20
SQL-like query language for the SAM/BAM file format
most recent commit 7 months ago
Hts Python ⭐ 18
pythonic wrapper for htslib
most recent commit 7 years ago
Pheniqs ⭐ 16
Fast and accurate sequence demultiplexing
most recent commit 2 years ago
Fast5seek ⭐ 11
Subset of fast5 files contained in a fastq, BAM, or SAM file.
total releases 2most recent commit a year ago
Ruby Htslib ⭐ 7
HTSlib bindings for Ruby
total releases 19most recent commit 3 months ago
The 3 Most Depended On Sam Bam Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 7 months agopypi fuc} Downloads
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11latest release June 14, 2023most recent commit a month agocargo hts-sys} Downloads
The 10 Latest Releases In Sam Bam Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 7 months agopypi fuc} Downloads
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11latest release June 14, 2023most recent commit a month agocargo hts-sys} Downloads
Ruby Htslib ⭐ 7
HTSlib bindings for Ruby
total releases 19latest release May 17, 2023most recent commit 3 months ago
Sambamba ⭐ 552
Tools for working with SAM/BAM data
total releases 1latest release October 05, 2022most recent commit 8 months ago
Samql ⭐ 20
SQL-like query language for the SAM/BAM file format
latest release May 30, 2021most recent commit 7 months ago
Biod ⭐ 43
A D library for computational biology and bioinformatics
total releases 5latest release June 01, 2019most recent commit 4 years ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37latest release May 10, 2019most recent commit 3 months ago
Fast5seek ⭐ 11
Subset of fast5 files contained in a fastq, BAM, or SAM file.
total releases 2latest release October 19, 2018most recent commit a year ago
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