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The Top 13 Genomics Bam Open Source Projects

Open source projects categorized as Genomics Bam
Categories > Bam
Categories > Science > Genomics
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit 4 months ago
Genozip ⭐ 144
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
total releases 132most recent commit 3 months ago
Viral Ngs ⭐ 129
Viral genomics analysis pipelines
most recent commit 4 years ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37most recent commit 3 months ago
Simplesam ⭐ 55
Simple pure Python SAM parser and objects for working with SAM records
most recent commit 2 years ago
Hts Nim Tools ⭐ 41
useful command-line tools written to show-case hts-nim
most recent commit 3 years ago
Mapache ⭐ 23
mapping pipeline for ancient DNA
most recent commit 4 months ago
Hts Python ⭐ 18
pythonic wrapper for htslib
most recent commit 7 years ago
Hts.cr ⭐ 11
HTSlib bindings for Crystal
most recent commit 9 months ago
Bamscope ⭐ 7
A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments.
most recent commit 4 months ago
Ruby Htslib ⭐ 7
HTSlib bindings for Ruby
total releases 19most recent commit 3 months ago
Igvfox ⭐ 5
firefox addon : IGV (Integrative Genomics Viewer) control through mozilla Firefox
most recent commit 10 years ago
Bpbio ⭐ 5
basepair bio: a single binary with many useful genomics subtools.
most recent commit 5 years ago
The 4 Latest Releases In Genomics Bam Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Ruby Htslib ⭐ 7
HTSlib bindings for Ruby
total releases 19latest release May 17, 2023most recent commit 3 months ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37latest release May 10, 2019most recent commit 3 months ago
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