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The Top 23 Pipeline Assembly Open Source Projects

Open source projects categorized as Pipeline Assembly
Squeezemeta ⭐ 308
A complete pipeline for metagenomic analysis
total releases 2most recent commit 4 months ago
Purge_dups ⭐ 178
haplotypic duplication identification tool
most recent commit 4 months ago
3d Dna ⭐ 176
3D de novo assembly (3D DNA) pipeline
most recent commit 5 months ago
Mag ⭐ 164
Assembly and binning of metagenomes
most recent commit 3 months ago
Vgp Assembly ⭐ 160
VGP repository for the genome assembly working group
most recent commit a year ago
Redundans ⭐ 121
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
most recent commit 4 months ago
Shovill ⭐ 104
⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
most recent commit 4 years ago
Webrisc V ⭐ 102
WebRISC-V: A Web-Based Education-Oriented RISC-V Pipeline Simulation Environment [PHP]
most recent commit 3 months ago
Fungap ⭐ 102
FunGAP: fungal Genome Annotation Pipeline
most recent commit 5 months ago
Viralrecon ⭐ 101
Assembly and intrahost/low-frequency variant calling for viral samples
most recent commit 7 months ago
Emg Viral Pipeline ⭐ 98
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
most recent commit 7 months ago
Fermikit ⭐ 91
De novo assembly based variant calling pipeline for Illumina short reads
most recent commit 3 years ago
Arcs ⭐ 86
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
most recent commit 4 months ago
Ont Assembly Polish ⭐ 82
ONT assembly and Illumina polishing pipeline
most recent commit 3 years ago
Nes Pipeline ⭐ 80
🔄 Continuous integration for NES homebrew that adds screenshots taken in the cloud.
most recent commit 4 years ago
Aviary ⭐ 62
A hybrid assembly and MAG recovery pipeline (and more!)
total releases 19most recent commit 3 months ago
Helix Publishing Pipeline ⭐ 57
Unified publishing for Sitecore Helix solutions that extends existing Visual Studio and command line workflows
most recent commit 3 years ago
Muffin ⭐ 56
hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis
most recent commit 5 months ago
Falcon Phase ⭐ 53
FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
most recent commit 3 years ago
Rapt ⭐ 51
Read Assembly and Annotation Pipeline Tool
most recent commit 8 months ago
Funcscan ⭐ 49
(Meta-)genome screening for functional and natural product gene sequences
most recent commit 3 months ago
Bacass ⭐ 47
Simple bacterial assembly and annotation pipeline
most recent commit 6 months ago
Asap ⭐ 46
A scalable bacterial genome assembly, annotation and analysis pipeline
most recent commit 2 years ago
The 6 Latest Releases In Pipeline Assembly Open Source Projects
Pipeline Assembly ⭐ 7
Assembly for the DAISY Pipeline 2 distribution
total releases 46latest release November 22, 2023most recent commit 3 months ago
Aviary ⭐ 62
A hybrid assembly and MAG recovery pipeline (and more!)
total releases 19latest release November 20, 2023most recent commit 3 months ago
Squeezemeta ⭐ 308
A complete pipeline for metagenomic analysis
total releases 2latest release September 18, 2023most recent commit 4 months ago
Bohra ⭐ 12
A pipeline for bioinformatics analysis of bacterial genomes
total releases 52latest release March 09, 2021most recent commit 3 years ago
Datapipe ⭐ 10
A data processing framework
total releases 1latest release December 16, 2016most recent commit 7 years ago
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