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The Top 23 Assembly Genome Open Source Projects

Open source projects categorized as Assembly Genome
Categories > Science > Genome
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97most recent commit 4 months agopypi jcvi} Downloads
Canu ⭐ 613
A single molecule sequence assembler for genomes large and small.
most recent commit 3 months ago
Nanopolish ⭐ 496
Signal-level algorithms for MinION data
most recent commit 8 months ago
Hifiasm ⭐ 443
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
most recent commit 3 months ago
Megahit ⭐ 442
Ultra-fast and memory-efficient (meta-)genome assembler
most recent commit a year ago
Unicycler ⭐ 428
hybrid assembly pipeline for bacterial genomes
most recent commit a year ago
Quast ⭐ 327
Genome assembly evaluation tool
most recent commit 7 months ago
Ragtag ⭐ 286
Tools for fast and flexible genome assembly scaffolding and improvement
total releases 7most recent commit a year ago
Trycycler ⭐ 264
A tool for generating consensus long-read assemblies for bacterial genomes
most recent commit 6 months ago
Mashmap ⭐ 243
A fast approximate aligner for long DNA sequences
most recent commit 4 months ago
Merqury ⭐ 234
k-mer based assembly evaluation
most recent commit 3 months ago
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68most recent commit 5 months agopypi pyfastx} Downloads
Getorganelle ⭐ 209
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
most recent commit 7 months ago
Masurca ⭐ 207
most recent commit 7 months ago
Drep ⭐ 199
Rapid comparison and dereplication of genomes
dependent packages 1total releases 63most recent commit 7 months agopypi drep} Downloads
Soapdenovo2 ⭐ 197
Next generation sequencing reads de novo assembler.
most recent commit 5 months ago
Circlator ⭐ 193
A tool to circularize genome assemblies
total releases 33most recent commit 8 months ago
Gaas ⭐ 188
Genome Assembly and Annotation Service code
most recent commit 4 months ago
Vgp Assembly ⭐ 160
VGP repository for the genome assembly working group
most recent commit a year ago
Rust Mdbg ⭐ 149
minimizer-space de Bruijn graphs (mdBG) for whole genome assembly
most recent commit a year ago
Nextpolish ⭐ 145
Fast and accurately polish the genome generated by long reads.
most recent commit a year ago
Novoplasty ⭐ 140
NOVOPlasty - The organelle assembler and heteroplasmy caller
most recent commit 8 months ago
Ragout ⭐ 132
Chromosome-level scaffolding using multiple references
total releases 1most recent commit a year ago
The 6 Most Depended On Assembly Genome Open Source Projects
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Pyliftover ⭐ 47
Pure-python implementation of UCSC liftOver genome coordinate conversion
dependent packages 15total releases 4latest release May 25, 2019most recent commit 5 years agopypi pyliftover} Downloads
Liftover ⭐ 51
liftover for python, made fast with cython
dependent packages 8total releases 20latest release November 02, 2023most recent commit 6 months agopypi liftover} Downloads
Drep ⭐ 199
Rapid comparison and dereplication of genomes
dependent packages 1total releases 63latest release September 15, 2023most recent commit 7 months agopypi drep} Downloads
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97latest release August 30, 2023most recent commit 4 months agopypi jcvi} Downloads
The 10 Latest Releases In Assembly Genome Open Source Projects
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Teloclip ⭐ 26
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
total releases 3latest release November 06, 2023most recent commit 3 months ago
Liftover ⭐ 51
liftover for python, made fast with cython
dependent packages 8total releases 20latest release November 02, 2023most recent commit 6 months agopypi liftover} Downloads
Drep ⭐ 199
Rapid comparison and dereplication of genomes
dependent packages 1total releases 63latest release September 15, 2023most recent commit 7 months agopypi drep} Downloads
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97latest release August 30, 2023most recent commit 4 months agopypi jcvi} Downloads
Zga ⭐ 6
ZGA prokaryotic genome assembly and annotation pipeline
total releases 22latest release December 02, 2022most recent commit a year ago
Svim Asm ⭐ 48
Structural Variant Identification Method using Genome Assemblies
total releases 3latest release September 20, 2022most recent commit 2 years ago
Uniqtag ⭐ 23
Abbreviate strings to short, unique identifiers
total releases 2latest release June 12, 2022most recent commit 2 years ago
Mashpit ⭐ 6
:pencil: Sketch-based surveillance platform
total releases 6latest release May 25, 2022most recent commit 2 years ago
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