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The Top 23 Genome Assembler Open Source Projects

Open source projects categorized as Genome Assembler
Categories > Science > Genome
Canu ⭐ 613
A single molecule sequence assembler for genomes large and small.
most recent commit 3 months ago
Megahit ⭐ 442
Ultra-fast and memory-efficient (meta-)genome assembler
most recent commit a year ago
Abyss ⭐ 276
🔬 Assemble large genomes using short reads
most recent commit 8 months ago
Masurca ⭐ 207
most recent commit 7 months ago
Soapdenovo2 ⭐ 197
Next generation sequencing reads de novo assembler.
most recent commit 5 months ago
Raven ⭐ 177
De novo genome assembler for long uncorrected reads
most recent commit 5 months ago
Novoplasty ⭐ 140
NOVOPlasty - The organelle assembler and heteroplasmy caller
most recent commit 8 months ago
Shovill ⭐ 104
⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
most recent commit 4 years ago
Skesa ⭐ 99
SKESA assembler
most recent commit 3 months ago
Peregrine ⭐ 94
Peregrine: Fast Genome Assembler Using SHIMMER Index
most recent commit 2 years ago
Arcs ⭐ 86
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
most recent commit 4 months ago
Fermi ⭐ 68
A WGS de novo assembler based on the FMD-index for large genomes
most recent commit 10 years ago
Minia ⭐ 65
Minia is a short-read assembler based on a de Bruijn graph
most recent commit 5 months ago
Wengan ⭐ 57
An accurate and ultra-fast hybrid genome assembler
most recent commit 3 years ago
Helen ⭐ 52
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
total releases 19most recent commit 3 years ago
Gala ⭐ 45
Long-reads Gap-free Chromosome-scale Assembler
most recent commit 2 years ago
Pandoras Toolbox For Bioinformatics ⭐ 26
A collection of well-known bioinformatics programs.
most recent commit 9 years ago
Organelle_pba ⭐ 23
A software to assemble chloroplast and mitochodrial genomes using PacBio data
most recent commit 6 years ago
Nanoflow ⭐ 20
🔬 De novo assembly of nanopore reads using nextflow
most recent commit 4 years ago
Kronos ⭐ 17
A workflow assembler for cancer genome analytics and informatics
total releases 8most recent commit 7 years ago
Genome_assembly ⭐ 17
most recent commit 9 months ago
Setu ⭐ 12
SARS-CoV-2 Genome Assembler
most recent commit a year ago
Sage2 ⭐ 10
De novo genome assembler.
most recent commit 6 years ago
The 2 Latest Releases In Genome Assembler Open Source Projects
Helen ⭐ 52
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
total releases 19latest release March 23, 2020most recent commit 3 years ago
Kronos ⭐ 17
A workflow assembler for cancer genome analytics and informatics
total releases 8latest release October 06, 2016most recent commit 7 years ago
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