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The Top 23 Annotation Vcf Open Source Projects

Open source projects categorized as Annotation Vcf
Categories > Machine Learning > Annotation
Categories > Science > Vcf
Vcfanno ⭐ 334
annotate a VCF with other VCFs/BEDs/tabixed files
dependent packages 1total releases 41most recent commit 5 months ago
Nirvana ⭐ 158
The nimble & robust variant annotator
most recent commit 6 months ago
23andme2vcf ⭐ 82
convert your 23andme raw file to VCF | DEPRECATED, please see https://github.com/plantimals/2vcf
most recent commit 5 years ago
Bgt ⭐ 76
Flexible genotype query among 30,000+ samples whole-genome
most recent commit 5 years ago
Jannovar ⭐ 51
Annotation of VCF variants with functional impact and from databases (executable+library)
dependent packages 5total releases 27most recent commit 3 months ago
Vcf2db ⭐ 50
create a gemini-compatible database from a VCF
most recent commit 3 years ago
Vembrane ⭐ 50
vembrane filters VCF records using python expressions
total releases 31most recent commit 6 months ago
Gvanno ⭐ 43
Generic human DNA variant annotation pipeline
most recent commit 4 months ago
2vcf ⭐ 29
www.openb.io/2vcf convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations
most recent commit 5 years ago
Seqminer ⭐ 28
Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
dependent packages 8total releases 39most recent commit 5 months ago
Biotoolbox ⭐ 27
Tools for querying and analysis of genomic data
most recent commit 7 months ago
Varsome Api Client Python ⭐ 26
Example client programs for Saphetor's VarSome annotation API
most recent commit 6 months ago
Vapr ⭐ 23
VAPr: A Python package for NoSQL variant data storage, annotation and prioritization
total releases 30most recent commit 5 years ago
Vatools ⭐ 20
A set of tools to annotate VCF files with expression and readcount data
most recent commit 6 months ago
Pynnotator ⭐ 19
This is a Genome Annotation Framework developed with the goal of annotating VCF files (Exomes or Genomes) from patients with Mendelian Disorders.
dependent packages 1total releases 51most recent commit 3 years agopypi pynnotator} Downloads
Sift4g_create_genomic_db ⭐ 18
Create genomic databases with SIFT predictions. Input is an organism's genomic DNA (.fa) file and the gene annotation file (.gtf). Output will be a database that can be used with SIFT4G_Annotator.jar to annotate VCF files.
most recent commit 7 months ago
Anno ⭐ 15
Anno is a variant annotation tool
most recent commit 8 years ago
Hmtnote ⭐ 15
Human mitochondrial variants annotation using HmtVar.
most recent commit 6 months ago
Bcfanno ⭐ 12
A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file
most recent commit 4 years ago
Mucor ⭐ 12
total releases 2most recent commit 7 years ago
Survivor_ant ⭐ 11
A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
most recent commit 6 years ago
Varitas ⭐ 9
Variant analysis with rapid incorporation of tabular annotation sources
most recent commit 9 years ago
Stmp ⭐ 9
Sequence to Medical Phenotypes: A pipeline featuring variant annotation, prioritization, pharmacogenomics, and tools for analyzing genomic trios (mother, father, child).
most recent commit 8 years ago
The 4 Most Depended On Annotation Vcf Open Source Projects
Seqminer ⭐ 28
Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
dependent packages 8total releases 39latest release September 02, 2023most recent commit 5 months ago
Jannovar ⭐ 51
Annotation of VCF variants with functional impact and from databases (executable+library)
dependent packages 5total releases 27latest release September 13, 2022most recent commit 3 months ago
Vcfanno ⭐ 334
annotate a VCF with other VCFs/BEDs/tabixed files
dependent packages 1total releases 41latest release November 29, 2022most recent commit 5 months ago
The 8 Latest Releases In Annotation Vcf Open Source Projects
Seqminer ⭐ 28
Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
dependent packages 8total releases 39latest release September 02, 2023most recent commit 5 months ago
Vembrane ⭐ 50
vembrane filters VCF records using python expressions
total releases 31latest release July 26, 2023most recent commit 6 months ago
Vcfanno ⭐ 334
annotate a VCF with other VCFs/BEDs/tabixed files
dependent packages 1total releases 41latest release November 29, 2022most recent commit 5 months ago
Jannovar ⭐ 51
Annotation of VCF variants with functional impact and from databases (executable+library)
dependent packages 5total releases 27latest release September 13, 2022most recent commit 3 months ago
Vcfiterator ⭐ 5
Python module for iterating over a VCF file, parsing and generating data structures.
total releases 5latest release February 27, 2019most recent commit 5 years ago
Vapr ⭐ 23
VAPr: A Python package for NoSQL variant data storage, annotation and prioritization
total releases 30latest release November 18, 2017most recent commit 5 years ago
Mucor ⭐ 12
total releases 2latest release February 04, 2016most recent commit 7 years ago
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