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The Top 23 Annotation Genome Open Source Projects

Open source projects categorized as Annotation Genome
Categories > Machine Learning > Annotation
Categories > Science > Genome
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97most recent commit 4 months agopypi jcvi} Downloads
Bakta ⭐ 365
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
total releases 37most recent commit 3 months ago
Rsem ⭐ 332
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
most recent commit a year ago
Sarek ⭐ 299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
most recent commit 3 months ago
Edta ⭐ 294
Extensive de-novo TE Annotator
most recent commit 3 months ago
Gemini ⭐ 272
a lightweight db framework for exploring genetic variation.
most recent commit 4 years ago
Pgap ⭐ 263
NCBI Prokaryotic Genome Annotation Pipeline
most recent commit 3 months ago
Genometools ⭐ 261
GenomeTools genome analysis system.
most recent commit 6 months ago
Funannotate ⭐ 261
Eukaryotic Genome Annotation Pipeline
total releases 13most recent commit 5 months ago
Datasets ⭐ 259
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
total releases 118most recent commit 3 months ago
Augustus ⭐ 237
Genome annotation with AUGUSTUS
most recent commit 4 months ago
Biomartr ⭐ 198
Genomic Data Retrieval with R
dependent packages 3total releases 21most recent commit 5 months ago
Artemis ⭐ 191
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
most recent commit a year ago
Gaas ⭐ 188
Genome Assembly and Annotation Service code
most recent commit 4 months ago
Methylkit ⭐ 176
R package for DNA methylation analysis
most recent commit 3 months ago
Ampliconarchitect ⭐ 119
AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more regions of interest. Please "watch" this repository for improvements in runtime, accuracy and annotations for GRCh38 human reference genome coming up so
most recent commit 6 months ago
Cruzdb ⭐ 113
python access to UCSC genomes database
total releases 10most recent commit 4 years ago
Get_homologues ⭐ 98
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
most recent commit 3 months ago
Bacannot ⭐ 85
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
most recent commit 5 months ago
Staar ⭐ 81
An R package for performing STAAR procedure in whole-genome sequencing studies
most recent commit 3 months ago
Rnaflow ⭐ 74
A simple RNA-Seq differential gene expression pipeline using Nextflow
most recent commit 8 months ago
Dfast_core ⭐ 67
DDBJ Fast Annotation and Submission Tool
most recent commit 7 months ago
Lorean ⭐ 62
Long Reads Annotation pipeline
most recent commit 2 years ago
The 3 Most Depended On Annotation Genome Open Source Projects
Biomartr ⭐ 198
Genomic Data Retrieval with R
dependent packages 3total releases 21latest release December 02, 2023most recent commit 5 months ago
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97latest release August 30, 2023most recent commit 4 months agopypi jcvi} Downloads
The 10 Latest Releases In Annotation Genome Open Source Projects
Biomartr ⭐ 198
Genomic Data Retrieval with R
dependent packages 3total releases 21latest release December 02, 2023most recent commit 5 months ago
Datasets ⭐ 259
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
total releases 118latest release December 01, 2023most recent commit 3 months ago
Bakta ⭐ 365
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
total releases 37latest release November 29, 2023most recent commit 3 months ago
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97latest release August 30, 2023most recent commit 4 months agopypi jcvi} Downloads
Crisprdesignr ⭐ 10
Software used to design guide RNA sequences for CRISPR/Cas9 genome editing
total releases 3latest release April 12, 2023most recent commit a year ago
Zga ⭐ 6
ZGA prokaryotic genome assembly and annotation pipeline
total releases 22latest release December 02, 2022most recent commit a year ago
Ultra ⭐ 53
Long-read splice alignment with high accuracy
total releases 14latest release October 26, 2022most recent commit 10 months ago
Funannotate ⭐ 261
Eukaryotic Genome Annotation Pipeline
total releases 13latest release August 10, 2022most recent commit 5 months ago
Microbeannotator ⭐ 41
Pipeline for metabolic annotation of microbial genomes
total releases 10latest release April 27, 2021most recent commit 2 years ago
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