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The Top 23 R Analysis Bioinformatics Open Source Projects

Open source projects categorized as R Analysis Bioinformatics
Categories > Code Quality > Analysis
Categories > Data Processing > Bioinformatics
Immunarch ⭐ 256
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
most recent commit 8 months ago
Teachingdemos ⭐ 216
Bioinformatics related demos and tutorials using the R programming language
most recent commit a year ago
Gwa_tutorial ⭐ 184
A comprehensive tutorial about GWAS and PRS
most recent commit 4 years ago
Scde ⭐ 163
R package for analyzing single-cell RNA-seq data
most recent commit a year ago
Rnaseq Workflow ⭐ 133
A repository for setting up a RNAseq workflow
most recent commit 7 years ago
Snprelate ⭐ 90
R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)
most recent commit 3 months ago
Startapp ⭐ 71
The START App: R Shiny Transcriptome Analysis Resource Tool
most recent commit 3 years ago
Scatac Pro ⭐ 64
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
most recent commit 10 months ago
Bioinstaller ⭐ 50
A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
dependent packages 1total releases 15most recent commit a year ago
Twitter ⭐ 48
Code to analyse interesting Twitter data (e.g. conference coverage)
most recent commit 2 years ago
Liger ⭐ 47
Lightweight Iterative Gene set Enrichment in R
total releases 4most recent commit 3 years ago
Dchic ⭐ 44
dcHiC: Differential compartment analysis for Hi-C datasets
most recent commit 3 months ago
Qtlmap ⭐ 36
Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
most recent commit 3 months ago
Shinygeo ⭐ 35
Gene Expression Omnibus Analysis with Shiny 🔬
most recent commit 2 years ago
Nam Genomes ⭐ 34
Detailed bioinformatics scripts and methods used in the NAM genome paper.
most recent commit 2 years ago
Dmrichr ⭐ 33
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
most recent commit 7 months ago
Tcr ⭐ 31
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
dependent packages 3total releases 12most recent commit 4 years ago
Seuratv3wizard ⭐ 26
A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3
most recent commit 4 years ago
Admixr ⭐ 25
An R package for reproducible and automated ADMIXTOOLS analyses
total releases 1most recent commit 9 months ago
Cellbench ⭐ 23
R package for benchmarking single cell analysis methods
most recent commit 7 months ago
Methrix ⭐ 22
An R 📦 for fast and flexible DNA methylation analysis
most recent commit 7 months ago
Chemrich ⭐ 19
Chemical Similarity Enrichment analysis of metabolomics datasets
most recent commit a year ago
Microbiomer ⭐ 17
A comprehensive R package for microbiome analysis.
most recent commit a year ago
The 2 Most Depended On R Analysis Bioinformatics Open Source Projects
Tcr ⭐ 31
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
dependent packages 3total releases 12latest release March 25, 2019most recent commit 4 years ago
The 4 Latest Releases In R Analysis Bioinformatics Open Source Projects
Liger ⭐ 47
Lightweight Iterative Gene set Enrichment in R
total releases 4latest release January 25, 2021most recent commit 3 years ago
Admixr ⭐ 25
An R package for reproducible and automated ADMIXTOOLS analyses
total releases 1latest release July 03, 2020most recent commit 9 months ago
Tcr ⭐ 31
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
dependent packages 3total releases 12latest release March 25, 2019most recent commit 4 years ago
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