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The Top 11 Python Alignment Phylogenetics Open Source Projects

Open source projects categorized as Python Alignment Phylogenetics
Categories > Data Processing > Alignment
Categories > Phylogenetics
Vcf2phylip ⭐ 216
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
most recent commit 10 months ago
Buddysuite ⭐ 105
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
total releases 18most recent commit 2 years ago
Trifusion ⭐ 61
Streamlining phylogenomic data gathering, processing and visualization
total releases 35most recent commit 6 years ago
Clipkit ⭐ 44
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
total releases 34most recent commit 5 months ago
Busco_phylogenomics ⭐ 26
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
most recent commit 7 months ago
Phylociraptor ⭐ 23
rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
most recent commit 5 months ago
Pyphlawd ⭐ 16
Python version of PHLAWD
most recent commit 2 years ago
Gctree ⭐ 12
GCtree: phylogenetic inference of genotype-collapsed trees
total releases 15most recent commit 3 months ago
Captus ⭐ 8
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
most recent commit 3 months ago
Supermatrix ⭐ 8
scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
most recent commit 5 months ago
Msa_trimmer ⭐ 5
Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
most recent commit 5 years ago
The 4 Latest Releases In Python Alignment Phylogenetics Open Source Projects
Clipkit ⭐ 44
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
total releases 34latest release October 02, 2023most recent commit 5 months ago
Gctree ⭐ 12
GCtree: phylogenetic inference of genotype-collapsed trees
total releases 15latest release August 10, 2023most recent commit 3 months ago
Buddysuite ⭐ 105
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
total releases 18latest release December 06, 2021most recent commit 2 years ago
Trifusion ⭐ 61
Streamlining phylogenomic data gathering, processing and visualization
total releases 35latest release September 26, 2018most recent commit 6 years ago
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