Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Bioinformatics Alignment Open Source Projects

Open source projects categorized as Bioinformatics Alignment
Categories > Data Processing > Alignment
Categories > Data Processing > Bioinformatics
Minimap2 ⭐ 1,613
A versatile pairwise aligner for genomic and spliced nucleotide sequences
dependent packages 32total releases 27most recent commit 3 months agopypi mappy} Downloads
Bwa ⭐ 1,282
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
total releases 1most recent commit a year ago
Mmseqs2 ⭐ 1,235
MMseqs2: ultra fast and sensitive search and clustering suite
most recent commit 2 months ago
Poly ⭐ 620
A Go package for engineering organisms.
most recent commit 3 months ago
Vsearch ⭐ 605
Versatile open-source tool for microbiome analysis
total releases 1most recent commit 3 months ago
Bowtie2 ⭐ 594
A fast and sensitive gapped read aligner
most recent commit 3 months ago
Foldseek ⭐ 545
Foldseek enables fast and sensitive comparisons of large structure sets.
most recent commit 3 months ago
Clinker ⭐ 452
Gene cluster comparison figure generator
dependent packages 2total releases 29most recent commit 9 months agopypi clinker} Downloads
Hh Suite ⭐ 429
Remote protein homology detection suite.
most recent commit a year ago
Edlib ⭐ 421
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
dependent packages 35total releases 20most recent commit a year agopypi edlib} Downloads
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Bismark ⭐ 335
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
most recent commit 7 months ago
Sortmerna ⭐ 220
SortMeRNA: next-generation sequence filtering and alignment tool
most recent commit a month ago
Ntseq ⭐ 204
JavaScript (node + browser) bioinformatics library for nucleotide sequence manipulation and analysis.
dependent packages 4total releases 18most recent commit 6 years agonpm ntseq} Downloads
Spoa ⭐ 135
SIMD partial order alignment tool/library
most recent commit 5 months ago
V Pipe ⭐ 119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
most recent commit 4 months ago
Ksw2 ⭐ 115
Global alignment and alignment extension
most recent commit 10 months ago
Strobealign ⭐ 114
Aligns short reads using dynamic seed size with strobemers
most recent commit 3 months ago
Sibeliaz ⭐ 113
A fast whole-genome aligner based on de Bruijn graphs
most recent commit 2 years ago
Block Aligner ⭐ 111
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
total releases 10most recent commit 7 months ago
Biojava Tutorial ⭐ 111
📖📚An introductory tutorial for BioJava
most recent commit 4 months ago
Buddysuite ⭐ 105
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
total releases 18most recent commit 2 years ago
Kalign ⭐ 105
A fast multiple sequence alignment program.
total releases 1most recent commit 4 months ago
The 9 Most Depended On Bioinformatics Alignment Open Source Projects
Edlib ⭐ 421
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
dependent packages 35total releases 20latest release August 20, 2021most recent commit a year agopypi edlib} Downloads
Minimap2 ⭐ 1,613
A versatile pairwise aligner for genomic and spliced nucleotide sequences
dependent packages 32total releases 27latest release December 26, 2021most recent commit 3 months agopypi mappy} Downloads
Ntseq ⭐ 204
JavaScript (node + browser) bioinformatics library for nucleotide sequence manipulation and analysis.
dependent packages 4total releases 18latest release January 17, 2017most recent commit 6 years agonpm ntseq} Downloads
Aioli ⭐ 83
Framework for building fast genomics web tools with WebAssembly and WebWorkers
dependent packages 4total releases 24latest release September 17, 2022most recent commit 7 months agonpm @biowasm/aioli} Downloads
Algebra ⭐ 10
A Boolean Algebra for Genetic Variants
dependent packages 2total releases 18latest release December 04, 2023most recent commit 3 months agopypi mutalyzer-algebra} Downloads
Clinker ⭐ 452
Gene cluster comparison figure generator
dependent packages 2total releases 29latest release December 09, 2022most recent commit 9 months agopypi clinker} Downloads
Lexicon Mono Seq ⭐ 13
DOM Text Based Multiple Sequence Alignment Library
dependent packages 2total releases 26latest release June 30, 2019most recent commit 5 years agonpm lexicon-mono-seq} Downloads
Nwalgo ⭐ 8
Needleman-Wunsch Alignment in Go
dependent packages 1total releases 1latest release August 17, 2016most recent commit 8 years ago
Minimap2 Rs ⭐ 46
Rust bindings to minimap2 library
dependent packages 1total releases 15latest release September 12, 2023most recent commit 5 months agocargo minimap2-sys} Downloads
The 10 Latest Releases In Bioinformatics Alignment Open Source Projects
Algebra ⭐ 10
A Boolean Algebra for Genetic Variants
dependent packages 2total releases 18latest release December 04, 2023most recent commit 3 months agopypi mutalyzer-algebra} Downloads
Ska.rust ⭐ 35
Split k-mer analysis – version 2
total releases 14latest release November 23, 2023most recent commit 5 months ago
Teloclip ⭐ 26
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
total releases 3latest release November 06, 2023most recent commit 3 months ago
Clipkit ⭐ 44
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
total releases 34latest release October 02, 2023most recent commit 5 months ago
Minimap2 Rs ⭐ 46
Rust bindings to minimap2 library
dependent packages 1total releases 15latest release September 12, 2023most recent commit 5 months agocargo minimap2-sys} Downloads
Segul ⭐ 11
An ultrafast and memory efficient tool for phylogenomics
total releases 54latest release July 09, 2023most recent commit 3 months ago
Elynx ⭐ 9
Analyze, modify and simulate molecular sequence data and phylogenetic trees in a reproducible way.
total releases 24latest release June 23, 2023most recent commit 8 months ago
Pywfa ⭐ 17
Python wrapper for wavefront alignment using WFA2-lib
total releases 11latest release June 15, 2023most recent commit 10 months ago
Woltka ⭐ 58
Woltka: a versatile meta'omic data classifier
total releases 4latest release December 26, 2022most recent commit 4 months ago
Popular Data Processing Categories
Jupyter Notebook
Dataset
Sql
Validation
Pipeline
Translation
Data Science
Classification
Transaction
Scraper
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.