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The Top 9 Microbiome 16s Open Source Projects

Open source projects categorized as Microbiome 16s
Categories > 16s
Categories > Microbiome
Ampliseq ⭐ 141
Amplicon sequencing analysis workflow using DADA2 and QIIME2
most recent commit 3 months ago
Rdptools ⭐ 36
Collection of commonly used RDP Tools for easy building
most recent commit 3 years ago
Datest ⭐ 34
Compare different differential abundance and expression methods
most recent commit 2 years ago
Microbiomeutilities ⭐ 29
The is mostly a wrapper tool using phyloseq and microbiome R packages.
most recent commit a year ago
Miceco ⭐ 28
Various functions for analysis of microbial community data
most recent commit a year ago
Microbiome Analysis Using R ⭐ 17
Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
most recent commit 2 years ago
Phylotoast ⭐ 12
Tools for phylogenetic data analysis including visualization and cluster-computing support.
total releases 3most recent commit 2 years ago
Dogs ⭐ 8
Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"
most recent commit 6 years ago
16s Rdna V3 V4 ⭐ 8
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
most recent commit 3 years ago
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