Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Vg | 1,022 | 3 months ago | 760 | other | C++ | |||||
tools for working with genome variation graphs | ||||||||||
Hail | 905 | 17 | 3 months ago | 146 | October 30, 2023 | 211 | mit | Python | ||
Cloud-native genomic dataframes and batch computing | ||||||||||
Nanopolish | 496 | 9 months ago | 60 | mit | C++ | |||||
Signal-level algorithms for MinION data | ||||||||||
Samplot | 458 | 5 months ago | 3 | October 11, 2020 | 42 | mit | Python | |||
Plot structural variant signals from many BAMs and CRAMs | ||||||||||
Vcftools | 415 | a year ago | 100 | lgpl-3.0 | C++ | |||||
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project. | ||||||||||
Snippy | 408 | 6 months ago | 179 | gpl-2.0 | Perl | |||||
:scissors: :zap: Rapid haploid variant calling and core genome alignment | ||||||||||
Hap.py | 283 | 2 years ago | 80 | other | C++ | |||||
Haplotype VCF comparison tools | ||||||||||
Pygeno | 242 | 1 | 4 years ago | 18 | December 15, 2021 | 5 | apache-2.0 | Python | ||
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs | ||||||||||
Pcgr | 234 | 6 months ago | 13 | mit | R | |||||
Personal Cancer Genome Reporter (PCGR) | ||||||||||
Gridss | 212 | a year ago | 58 | other | Java | |||||
GRIDSS: the Genomic Rearrangement IDentification Software Suite |