Project Name	Stars	Repos Using This	Packages Using This	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Nextflow	2,447		16	3 months ago	250	November 24, 2023	336	apache-2.0	Groovy
A DSL for data-driven computational pipelines
Galaxy	1,211	2	23	3 months ago	30	December 08, 2023	2,169	other	Python
Data intensive science for everyone.
Scipipe	1,010			9 months ago	47	October 14, 2021	51	mit	Go
Robust, flexible and resource-efficient pipelines using Go and the commandline
Rush	782			5 months ago	32	November 13, 2023	7	mit	Go
A cross-platform command-line tool for executing jobs in parallel
Juicer	313			a year ago			40	mit	Shell
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Sarek	299			3 months ago			180	mit	Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Bedops	244			2 years ago	1	March 03, 2021	17	other	C
:microscope: BEDOPS: high-performance genomic feature operations
Bpipe	220			6 months ago			155	other	Groovy
Bpipe - a tool for running and managing bioinformatics pipelines
Tools	205		2	3 months ago	42	December 20, 2023	221	mit	Python
Python package with helper tools for the nf-core community.
Ugene	190			3 months ago			6	gpl-2.0	C++
UGENE is free open-source cross-platform bioinformatics software

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Nextflow ⭐ 2,447

A DSL for data-driven computational pipelines

dependent packages 16total releases 250most recent commit 3 months ago

Galaxy ⭐ 1,211

Data intensive science for everyone.

dependent packages 23total releases 30most recent commit 3 months ago

Scipipe ⭐ 1,010

Robust, flexible and resource-efficient pipelines using Go and the commandline

total releases 47most recent commit 9 months ago

Rush ⭐ 782

A cross-platform command-line tool for executing jobs in parallel

total releases 32most recent commit 5 months ago

Juicer ⭐ 313

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

most recent commit a year ago

Sarek ⭐ 299

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

most recent commit 3 months ago

Bedops ⭐ 244

:microscope: BEDOPS: high-performance genomic feature operations

total releases 1most recent commit 2 years ago

Bpipe ⭐ 220

Bpipe - a tool for running and managing bioinformatics pipelines

most recent commit 6 months ago

Tools ⭐ 205

Python package with helper tools for the nf-core community.

dependent packages 2total releases 42most recent commit 3 months ago

Ugene ⭐ 190

UGENE is free open-source cross-platform bioinformatics software

most recent commit 3 months ago

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