Project Name	Stars	Repos Using This	Packages Using This	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Mdtraj	519		7	3 months ago	5	September 13, 2022	71	lgpl-2.1	C
An open library for the analysis of molecular dynamics trajectories
Gromacswrapper	154	4	4	5 months ago	15	September 16, 2023	11	gpl-3.0	Python
GromacsWrapper wraps system calls to GROMACS tools into thin Python classes (GROMACS 4.6.5 - 2023 supported).
Mcmd	74			3 months ago			39	gpl-3.0	C++
Monte Carlo and Molecular Dynamics Simulation Package
Barnaba	26			a year ago	6	December 15, 2022	13	gpl-3.0	Jupyter Notebook
Analyse Nucleic Acids Structure and Simulations with baRNAba
Ommprotocol	20	3		3 years ago	11	September 07, 2018	5	lgpl-3.0	Python
A command line application to launch molecular dynamics simulations with OpenMM
Upside Md	14			2 years ago				other	C++
Coarse-grained molecular dynamics for protein physics
Dockingml	14			4 years ago			4	gpl-3.0	Python
A package for MD, Docking and Machine learning drug discovery pipeline
Mode Task	10			3 years ago			1	gpl-3.0	C++
PCA and normal mode analysis of proteins
Upside Md	9			7 years ago			1	other	C++
Coarse-grained molecular dynamics for protein physics
Pyxmolpp2	5			7 months ago			4	mit	C++
Processing and analysis of MD trajectories

Alternatives To Mdtraj

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Mdtraj ⭐ 519

An open library for the analysis of molecular dynamics trajectories

dependent packages 7total releases 5most recent commit 3 months ago

Gromacswrapper ⭐ 154

GromacsWrapper wraps system calls to GROMACS tools into thin Python classes (GROMACS 4.6.5 - 2023 supported).

dependent packages 4total releases 15most recent commit 5 months ago

Mcmd ⭐ 74

Monte Carlo and Molecular Dynamics Simulation Package

most recent commit 3 months ago

Barnaba ⭐ 26

Analyse Nucleic Acids Structure and Simulations with baRNAba

total releases 6most recent commit a year ago

Ommprotocol ⭐ 20

A command line application to launch molecular dynamics simulations with OpenMM

total releases 11most recent commit 3 years ago

Upside Md ⭐ 14

Coarse-grained molecular dynamics for protein physics

most recent commit 2 years ago

Dockingml ⭐ 14

A package for MD, Docking and Machine learning drug discovery pipeline

most recent commit 4 years ago

Mode Task ⭐ 10

PCA and normal mode analysis of proteins

most recent commit 3 years ago

Upside Md ⭐ 9

Coarse-grained molecular dynamics for protein physics

most recent commit 7 years ago

Pyxmolpp2 ⭐ 5

Processing and analysis of MD trajectories

most recent commit 7 months ago

Suggest An Alternative To mdtraj

Alternative Project Comparisons

Mdtraj vs Gromacswrapper

Mdtraj vs Mcmd

Mdtraj vs Barnaba

Mdtraj vs Ommprotocol

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