Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Biopython | 3,918 | 1,465 | 1,373 | 2 months ago | 58 | February 13, 2023 | 545 | other | Python | |
Official git repository for Biopython (originally converted from CVS) | ||||||||||
Deepvariant | 2,978 | 4 months ago | 8 | bsd-3-clause | Python | |||||
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | ||||||||||
Gatk | 1,576 | 2 | 13 days ago | 46 | March 16, 2023 | 1,299 | other | Java | ||
Official code repository for GATK versions 4 and up | ||||||||||
Galaxy | 1,211 | 2 | 23 | 2 months ago | 30 | December 08, 2023 | 2,169 | other | Python | |
Data intensive science for everyone. | ||||||||||
Vg | 1,022 | 2 months ago | 760 | other | C++ | |||||
tools for working with genome variation graphs | ||||||||||
Nucleus | 675 | 2 | 3 years ago | 18 | August 31, 2021 | 1 | other | C++ | ||
Python and C++ code for reading and writing genomics data. | ||||||||||
Pyfaidx | 427 | 103 | 119 | 2 months ago | 86 | September 22, 2023 | 14 | other | Python | |
Efficient pythonic random access to fasta subsequences | ||||||||||
Genomicspapers | 350 | 5 years ago | 2 | |||||||
The Leek group guide to genomics papers | ||||||||||
Nucleotide Transformer | 305 | 2 months ago | 12 | other | Python | |||||
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics | ||||||||||
Htsjdk | 271 | 170 | 87 | 3 months ago | 78 | October 13, 2023 | 303 | Java | ||
A Java API for high-throughput sequencing data (HTS) formats. |