Ancestry_viz
GTM and t-SNE classification and clustering of 1000 Genomes Project populations
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Krakenuniq | 201 | 3 months ago | 107 | gpl-3.0 | C++ | |||||
| 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results | ||||||||||
| Pyani | 140 |  | 2 | 1 | 2 years ago | 18 | July 27, 2022 | 48 | mit | Python |
| Application and Python module for average nucleotide identity analyses of microbes. | ||||||||||
| Bonsai | 68 | 8 months ago | 3 | mit | C++ | |||||
| Bonsai: Fast, flexible taxonomic analysis and classification | ||||||||||
| Tesorter | 59 | a year ago | 4 | gpl-3.0 | Pep8 | |||||
| TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes | ||||||||||
| Woltka | 58 | 4 months ago | 4 | December 26, 2022 | 46 | bsd-3-clause | Python | |||
| Woltka: a versatile meta'omic data classifier | ||||||||||
| Metacache | 49 | a year ago | 8 | gpl-3.0 | C++ | |||||
| memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping | ||||||||||
| Despi | 8 | 3 years ago | 1 | apache-2.0 | C++ | |||||
| fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing | ||||||||||
| Kameris | 7 | 1 | 6 years ago | 23 | September 22, 2018 | 3 | mit | Python | ||
| A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks | ||||||||||
| Cuclark | 6 | 6 years ago | 1 | gpl-3.0 | C++ | |||||
| Metagenomic classifier for CUDA-enabled GPUs | ||||||||||
| K2mem | 6 | 3 years ago | 2 | other | C++ | |||||
| K2Mem is a variant of Kraken 2 taxonomic sequence classification system that can learn from the previous classifications. | ||||||||||
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Python
Classification
Genome
Tsne