Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Krakenuniq | 201 | 3 months ago | 107 | gpl-3.0 | C++ | |||||
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results | ||||||||||
Pyani | 140 | 2 | 1 | 2 years ago | 18 | July 27, 2022 | 48 | mit | Python | |
Application and Python module for average nucleotide identity analyses of microbes. | ||||||||||
Bonsai | 68 | 8 months ago | 3 | mit | C++ | |||||
Bonsai: Fast, flexible taxonomic analysis and classification | ||||||||||
Tesorter | 59 | a year ago | 4 | gpl-3.0 | Pep8 | |||||
TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes | ||||||||||
Woltka | 58 | 4 months ago | 4 | December 26, 2022 | 46 | bsd-3-clause | Python | |||
Woltka: a versatile meta'omic data classifier | ||||||||||
Metacache | 49 | a year ago | 8 | gpl-3.0 | C++ | |||||
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping | ||||||||||
Despi | 8 | 3 years ago | 1 | apache-2.0 | C++ | |||||
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing | ||||||||||
Kameris | 7 | 1 | 6 years ago | 23 | September 22, 2018 | 3 | mit | Python | ||
A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks | ||||||||||
Cuclark | 6 | 6 years ago | 1 | gpl-3.0 | C++ | |||||
Metagenomic classifier for CUDA-enabled GPUs | ||||||||||
K2mem | 6 | 3 years ago | 2 | other | C++ | |||||
K2Mem is a variant of Kraken 2 taxonomic sequence classification system that can learn from the previous classifications. |