Code for the analysis of the AVT fMRI high-res experiment.
You will need matlab and SPM12 to make use of this code.
|Matlab, toolbox and other dependencies||Used version||Purpose|
|SPM12||v6685||preprocessing, GLM, ...|
Other functions from github and the mathwork file exchange are needed. All of
them are shipped with this repo in the
lib folder or can be pulled from github
So to install all the code and its dependencies you simply to run:
git clone --recurse-submodules https://github.com/Remi-Gau/AVT_analysis.git
When in the root folder simply run
initEnv from the matlab prompt to add all
relevant folders to the matlab path.
Files used to stored settings are in the following folders:
You might need to compile a a mex file to run the PCM if you are on Linux.
cd(fullfile('lib', 'pcm_toolbox')) mex traceABtrans.c
src/figures/PlotBoldProfile.m will plot the main figures for BOLD
virtualenv -p /usr/bin/python3.8 env source env/bin/activate pip install -r requirements.txt pre-commit install